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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000274300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MYB | ||||||||
Protein Properties | Length: 351aa MW: 39635.5 Da PI: 6.5077 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.6e-18 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl MDP0000274300 40 RGPWTVEEDLALMNYIANHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 87 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.3e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ + eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ MDP0000274300 93 RGNISLEEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 136 78899*****************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.76 | 35 | 91 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.05E-30 | 37 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-14 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-16 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.45E-11 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 18.265 | 92 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-14 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 93 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 95 | 141 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.56E-7 | 113 | 136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MAKGTRGCNS PSSQVSAEIL NETGSHDHEE AEDQMMDLRR GPWTVEEDLA LMNYIANHGE 60 GRWNSLARCA GLKRTGKSCR LRWLNYLRPD VRRGNISLEE QLLILELHSR WGNRWSKIAQ 120 HLPGRTDNEI KNYWRTRVQK HAKQLKCDVN SKQFKDTMRY LWMPRLVERI QAAAATSTAT 180 NATATNSSIA APATTHHFNN NINNNFQSSA QMLLQPSHHH FGVSSHSQLT PSYSTPENSS 240 TAASSDSFGT QVSPVSDLTD YYTPTTAATA ISVNNNPTPD NSYFVQANHQ VGTYDNYSGY 300 FSNQGFGLEH FQNMDEQNNN DQWGTVDSGD ISDNLWNVED MWFLQQQLSN I |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 37 | 140 | 4 | 106 | B-MYB |
1h8a_C | 6e-24 | 37 | 134 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00334 | DAP | Transfer from AT3G06490 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR828540 | 1e-144 | FR828540.1 Rosa rugosa mRNA for putative MYB transcription factor (myb7 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008390410.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9LDE1 | 5e-95 | MY108_ARATH; Transcription factor MYB108 | ||||
TrEMBL | M5XQV5 | 1e-167 | M5XQV5_PRUPE; Uncharacterized protein | ||||
STRING | POPTR_0008s10080.1 | 1e-131 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF875 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06490.1 | 4e-92 | myb domain protein 108 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000274300 |